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Rhynie chert
Early Devonian sedimentary deposit exhibiting extraordinary fossil detail or completeness
Early Devonian sedimentary deposit exhibiting extraordinary fossil detail or completeness

The Rhynie chert is a Lower Devonian sedimentary deposit exhibiting extraordinary fossil detail or completeness (a Lagerstätte). It is exposed near the village of Rhynie, Aberdeenshire, Scotland; a second unit, the Windyfield chert, is located some 700 m away.
The Rhynie chert contains exceptionally preserved plant, fungus, lichen and animal material preserved in place by an overlying volcanic deposit. The bulk of the Devonian fossil bed consists of primitive plants (which had water-conducting cells and sporangia, but no true leaves), along with arthropods, lichens, algae and fungi.
This fossil bed is remarkable for two reasons. First, the age of the site (Pragian, Early Devonian, formed about ) places it at an early stage in the colonisation of land. Second, these cherts are famous for their exceptional state of ultrastructural preservation, with individual cell walls easily visible in polished specimens. Stomata have been counted and lignin remnants detected in the plant material, and the breathing apparatus of trigonotarbids—of the class Arachnida—(known as book lungs) can be seen in cross-sections. Fungal hyphae can be seen entering plant material, acting as decomposers and mycorrhizal symbionts.
Location
The bed is under at least 1 metre of overburden, in a small field near the village of Rhynie, so is effectively inaccessible to collectors; besides which, the site is a Site of Special Scientific Interest. A second unit, the Windyfield chert, is some 700 m from the Rhynie. The Rhynie chert extends for at least 80 m along strike and 90 m down-dip.
History of research
The chert was discovered by William Mackie while mapping the western margin of the Rhynie basin in 1910–1913.
Until recently, the Rhynie chert was the only such deposit known from the geological record, although recent work has turned up other localities from different time periods and continents.
Conditions of formation
The chert was formed when silica-rich water from volcanic springs rose rapidly and petrified the early terrestrial ecosystem, in situ and almost instantaneously, in much the same fashion that organisms are petrified by hot springs today interbedded with sands, shales and tuffs - which speak of local volcanic activity.{{cite journal | access-date = 2008-05-15
Fossils were formed as silica formed in the hot springs themselves; when silica-rich water flooded the surrounding areas; and when it permeated into the surrounding soil. The texture of the sinter formed resemble those found today in freshwater streams at Yellowstone which are typically alkaline (pH 8.7) and tepid 20 to. The springs were periodically active, and flowed into an alluvial plain containing small lakes. By analogy with Yellowstone, the chert itself probably formed in a marshy area towards the latter end of the extent of outwash from the springs. Living vegetation covered around 55% of the land area, with litter covering 30% and the remaining 15% of the ground being bare. A braided :Contains useful reconstructions of both the plant associations, and the regional setting. river flowing to the north periodically deposited the sandy layers found in cores when it flooded its banks.{{cite journal
Sedimentary textures which appear to have formed in the hydrothermal vents themselves are preserved with a brecciated texture;
Preservation
Plants


The preservation of plants varies from perfect three-dimensional cellular permineralisation to flattened charcoal films. On occasion, plants may have their vertical axes preserved in growth position, with rhizoids still attached to rhizomes; even the plant litter is preserved.
Plants were only found on the land - none lived in the water of lakes or hot springs. Rhynia typically grew on sandy surfaces, and is often preserved there in life position; Horneophyton grew on sinter, the sediment formed by the hot springs. These two colonisers were subsequently joined by other genera. The time between sinter deposition events was too short to allow the populations to develop to climax communities, and correspondingly early colonisers appear most frequently, pseudo-randomly, in logged sequences.
Plants demonstrate best the great value of the exceptional preservation of the Rhynie chert. The presence of soft tissue, including parenchyma, is not observed elsewhere in the fossil record until the advent of amber in the Triassic. This allows the study of structures such as the air spaces behind stomata, whereas the conventional record at its best allows no more than the counting of stomata. It has also enabled paleobotanists to firmly deduce that plants such as Aglaophyton were* not* aquatic, as once believed.
Further, as plants are preserved in situ, the study of exactly how and why the branching patterns of the early plants emerged is possible, whereas typical fossils only show that branching was present. The analysis of rhizomes and rhizoids makes it possible to discern which plants had an active water uptake system (e.g. Horneophyton), and which were likely to have colonised waterlogged surfaces (Asteroxylon). In some cases, it is possible to see different mechanisms of repairing wounds, and to deduce that they were caused by fungal or bacterial infection.
The preservation of spores attached to sporangia allows spore genera to be matched with their producers - something that is otherwise very difficult to do. The chert also allows the identification of the gametophyte phases of taxa such as Aglaophyton.
Analysis of spores shows that the flora was lacking in some elements common elsewhere at this time, likely due to its setting in a mountainous region, rather than in a lowland flood plain like most other fossil deposits. However, the spores, which are distinctive enough to permit their producing organism to be identified - are identical to those found elsewhere in "normal" environments. There is no clear-cut evidence that the plants of the Rhynie assemblage were specifically adapted to stressed environments, and it is likely that the flora in fact represents those members of the global fauna that happened to be capable of colonising and surviving a hot spring environment by virtue of fortuitous preadaptations.

Seven land plant taxa have been identified in the Rhynie and Windyfield cherts:
- Aglaophyton
- Asteroxylon
- Horneophyton
- Nothia
- Rhynia
- Trichopherophyton
- Ventarura
Another group, Nematophytes, remains enigmatic, but may represent aquatic land plants.
Algae
Several putative chlorophytes have been discovered in the Rhynie assemblage (Mackiella and Rhynchertia). A well-preserved charophyte, Palaeonitella,
Arthropods
As a result of its exquisite preservation, the Rhynie chert boasts the most diverse non-marine fauna of its time, Typical members of the Rhynie chert arthropod fauna include the crustacean Lepidocaris, the euthycarcinoid Heterocrania,{{cite journal |access-date = 2008-05-15 |archive-url = https://archive.today/20121216075305/http://article.pubs.nrc-cnrc.gc.ca/ppv/RPViewDoc?handler=HandleInitialGet&articleFile=e03-065.pdf&journal=cjes&volume=40 |archive-date = 2012-12-16 |url-access= subscription
The oldest known hexapod (Rhyniella praecursor), which resembles the modern springtails, was found in the Rhynie chert, pushing dates for the origination of hexapods (a group that includes the insects) back to the Silurian period.
Fungi
Fungi known from the Rhynie chert include the chytridiomycetes,{{cite journal | hdl-access=free
The Chytridiomycetes, or Chytrids, are a basal group of fungi, closely related to the true fungi.
The chytrids display a range of behaviour in the Rhynie chert. Eucarpic and holocarpic forms are known - i.e. some forms grew specialised fruiting bodies while others did not show specialisation in this fashion. Saprotrophy may be present, and parasitism is common; one individual has even been found parasitising a germinating gametophyte. The fungi were aquatic, and grew in both plants and algae; they are also found preserved "loose" in the chert matrix. Their flagellate spores are preserved.
The largest organism present in Rhynie was probably a fungus, the enigmatic Prototaxites, growing as a mound a metre or more taller than anything in the community, whose isotopic composition varied like a saprotroph and whose septate pores resemble those of fungi.
Cyanobacteria
In the rare instances that cyanobacteria are found in the fossil record, their presence is usually the subject of much controversy, for their simple form is difficult to distinguish from inorganic structures such as bubbles.
However, bona fide cyanobacteria are preserved in the Rhynie chert. The aquatic organisms are thought to belong to the Oscillatoriales section on the basis of biomarker absence. The fossils are filamentous, around 3 μm in diameter, and grew on plants and the sediment itself. They occasionally form structured colonies which go on to create microbial mats.
Lichens
A new genus of lichen, Winfrenatia, has been recovered from the Rhynie chert. The lichen comprises a thallus, made of layered, aseptate hyphae; a number of depressions are formed on its top surface. Each depression contains a net of hyphae holding a sheathed cyanobacterium. The fungus appears to be related to the Zygomycetes, and the photobiont resembles the coccoid Gloeocapsa and Chroococcidiopsis.
Paleobiota
Animals
| Animals | Genus | Species | Higher taxon | Notes | Images | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Palaeocharinus | Trigonotarbida | Likely a predatory liquid-feeder | [[File:20201205 Palaeocharinus rhyniensis.png | thumb | center | P. rhyniensis reconstruction]] | |||||||||||||||
| Palaeocteniza | Trigonotarbida | Only fossil material comes from a moulted juvenile | |||||||||||||||||||
| Eophalangium | Tetrophthalmi | Preserves oldest tracheae in fossil record | |||||||||||||||||||
| Saccogulus | Arachnida incertae sedis | Bears an unusual pharynx-like structure | |||||||||||||||||||
| last1=Dunlop | first1=Jason A. | last2=Garwood | first2=Russell J. | title=Terrestrial invertebrates in the Rhynie chert ecosystem | journal=Philosophical Transactions of the Royal Society B: Biological Sciences | date=5 February 2018 | volume=373 | issue=1739 | article-number=20160493 | doi=10.1098/rstb.2016.0493 | pmid=29254958 | pmc=5745329 }} | Alycidae | All other mites in the Rhynie chert have been synonymised with this species | |||||||
| Crussolum | Scutigeromorpha | last1=Anderson | first1=Lyall I. | last2=Trewin | first2=Nigel H. | title=An Early Devonian arthropod fauna from the Windyfield cherts, Aberdeenshire, Scotland | journal=Palaeontology | date=May 2003 | volume=46 | issue=3 | pages=467–509 | doi=10.1111/1475-4983.00308 | bibcode=2003Palgy..46..467A }} | [[File:Crussolum crusserratum leg reconstruction.png | thumb | center | Reconstruction of a Crussolum leg]] | ||||
| Rhynimonstrum | Arthropoda incertae sedis | Possibly a myriapod, if so likely a millipede | |||||||||||||||||||
| Rhyniella | Collembola | Earliest known hexapod | |||||||||||||||||||
| Rhyniognatha | Myriapoda or Insecta | last1=Haug | first1=Carolin | last2=Haug | first2=Joachim T. | title=The presumed oldest flying insect: more likely a myriapod? | journal=PeerJ | date=30 May 2017 | volume=5 | article-number=e3402 | doi=10.7717/peerj.3402 | doi-access=free | pmid=28584727 | pmc=5452959 | bibcode=2017PeerJ...5e3402H }} | [[File:Rhyniognatha specimen.png | thumb | center | Specimen of Rhyniognatha]] | ||
| Leverhulmia | Myriapoda or Hexapoda | Affinities controversial | |||||||||||||||||||
| Heterocrania | Euthycarcinoidea | Oldest non-Cambrian euthycarcinoid | |||||||||||||||||||
| Lepidocaris | Branchiopoda | Only member of Lipostraca | [[File:Lepidocaris rhyniensis.jpg | thumb | center | Reconstruction of Lepidocaris]] | |||||||||||||||
| Castracollis | Branchiopoda | Stem-calmanostracan (related to tadpole shrimp) | [[File:Castracollis wilsonae.jpg | thumb | center | Reconstruction of Castracollis]] | |||||||||||||||
| Ebullitiocaris | Diplostraca? | Soft tissue unknown, only known from valves | |||||||||||||||||||
| Palaeonema | Enoplida | Earliest nematode in the fossil record | |||||||||||||||||||
| Rotifera indet. | Unapplicable | Gnathifera | Undescribed |
Plants and Multicellular Algae
| Plants and Algae | Genus | Species | Higher taxon | Notes | Images | |||
|---|---|---|---|---|---|---|---|---|
| Asteroxylon | Drepanophycales | Infected by parasitic root fungi | [[File:Asteroxylon life restoration.jpg | thumb | center | Asteroxylon life restoration]] | ||
| Aglaophyton | Polysporangiophytes | Preserves earliest known mycorrhizal fungi | [[File:Aglaophyton major reconstruccion en.jpg | thumb | center | Aglaophyton reconstruction]] | ||
| Horneophyton | Horneophytopsida | Female gametophyte also preserved, named Langiophyton | [[File:Horneophyton.svg | thumb | center | Schematic reconstruction of Horneophyton]] | ||
| Nothia | Zosterophylls? | May have been poisonous to fend off arthropods? | [[File:Nothia.png | thumb | center | Reconstruction of Nothia]] | ||
| Rhynia | Rhyniophytina | Gametophyte preserved, named Remyophyton (although another form may exist) | [[File:Rhynia reconstruction.jpg | thumb | center | Reconstruction of Rhynia]] | ||
| Trichopherophyton | Zosterophylls? | Unusually bore spines on its stems. | ||||||
| Ventarura | Zosterophylls? | Affinities unclear due to poor preservation. | [[File:Ventarura lyonii reconstruccion.jpg | thumb | center | Reconstruction of Ventarura]] | ||
| Zosterophylls? indet. | Lycophyta | Poorly preserved and only known from one specimen, yet noticeably distinct from all other Rhynie plants | ||||||
| Palaeonitella | Charales | Fungi preserved colonising this alga | ||||||
| Charophyta indet. | Streptophyta | Many Palaeonitella specimens may be juveniles of this species. | ||||||
| Mackiella | Ulotrichaceae | Preserves possible chloroplasts | ||||||
| Rhynchertia | Ulotrichaceae | Some specimens preserved with zoospores inside cells | ||||||
| Harpericystis | Chlorophyta | Microscopic alga which forms small multicellular colonies | ||||||
| Cymatiosphaera | Pyramimonadales? | Not assigned to a species, may be an indeterminate chlorophyte alga. | ||||||
| Pyramimonales indet? | Pyramimonadophyceae | Similar to the phycoma of extant Pterosperma, may be an indeterminate chlorophyte alga. | ||||||
| Anechosoma | Chlorophyta or Glaucophyta | Occasionally infected by Rhyniovexator, a chytrid or aphelid | ||||||
| Hagenococcus | Viridiplantae incertae sedis | Preserved in numerous different colony types | ||||||
| Xanthophyta indet. | Ochrophytina | First definitive xanthophyte in the fossil record? | ||||||
| Phaeophyceae indet? | Ochrophytina | Possible oldest brown alga in the fossil record | ||||||
| Characrhynium | Diaphoretickes incertae sedis | Resembles both modern Characium and Characiopsis |
Fungi
| Fungi | Genus | Species | Higher taxon | Notes | Images |
|---|---|---|---|---|---|
| Archaeosporites | Archaeosporaceae | Incredibly similar to Archaeospora | |||
| Brijax | Chytridiomycota | Placement within the group uncertain, colonises glomeromycote spores | |||
| Cultoraquaticus | Chytridiomycota | Epibiotic on enigmatic round structures | |||
| Frankbaronia | Oomycetes? | Second known oomycete fossil | |||
| Globicultrix | Chytridiomycota | Is itself a parasite of larger fungal spores | |||
| Glomites | Glomerales | Formed mycorrhizae in various land plants | |||
| Hassiella | Oomycetes | First known oomycete fossil | |||
| Helmutella | Fungi incertae sedis | Resembles Carboniferous "sporocarps" | |||
| Illmanomyces | Chytridiomycota | Grows on various other spores, fungal matter, plants and algae. | |||
| Krispiromyces | Endochytriaceae | Parasite of Palaeonitella, grows inside cells | |||
| Kryphiomyces | Fungi incertae sedis | Preserved inside a glomeromycote spore | |||
| Lyonomyces | Fungi incertae sedis | Grows on cells of Palaeonitella | |||
| Milleromyces | Endochytriaceae? | Grows on cells of Palaeonitella | |||
| Mycocarpon | Fungi incertae sedis | Earliest sporocarp fossil known | |||
| Mycokidstonia | Ambisporaceae | Previously thought to be an ascomycete | |||
| Nimbosphaera | Chytridiomycota | Likely zoosporangia of chytrids | |||
| Palaeoendogone | Mucoromycotina | Endophyte of Horneophyton | |||
| Palaeoglomus | Glomeromycota | Endophyte of Horneophyton | |||
| Palaeomyces | Mucoromycota | Grows on/within land plant stems | |||
| Paleopyrenomycites | Sordariomycetes | Also found growing on Asteroxylon | |||
| Palaeozoosporites | Chytridiomycota? | Root parasite of Asteroxylon | |||
| Paleoblastocladia | Blastocladiomycota | Oldest blastoclad fungus known, has sexual reproduction | |||
| Perexiflasca | Chytridiomycota | Grew on land plant remains | |||
| Potteromyces | Ascomycota incertae sedis | Plant pathogen of Asteroxylon | |||
| Prototaxites | Fungi incertae sedis | Affinities debated in a 2025 preprint | |||
| Retesporangicus | Blastocladiomycota incertae sedis | Earliest known fungus with multiple sporangia per hyphae | |||
| Rhizophidites | Chytridiomycota | Grew within Horneophyton and glomeromycote spores | |||
| Rhyniomycelium | Ascomycota? | Oldest fossil evidence of endoconidia in fungi. | |||
| Rhyniovexator | Chytridiomycota or Aphelida | Parasitic on unicellular algae | |||
| Scepasmatocarpion | Fungi incertae sedis | One of the oldest hyphal investments found | |||
| Scutellosporites | Gigasporaceae | Bears a germination shield, a feature shared only with the extant Scutellospora | |||
| Trewinomyces | Fungi incertae sedis | Grew on decaying plant matter | |||
| Veterisphaera | Fungi incertae sedis | Has a two-layered hyphal mantle | |||
| Windipila | Fungi incertae sedis (Glomeromycota?) | Bears unusual spines and projections from the mantle | |||
| Zwergimyces | Fungi incertae sedis | Only "mantled" fungal fossil with preserved development |
Other taxa
| Other taxa | Genus | Species | Higher taxon | Notes | Images | |||
|---|---|---|---|---|---|---|---|---|
| Palaeoleptochlamys | Arcellinida | One of the earliest known testate amoebae | ||||||
| Triskelia | Eukaryota incertae sedis | Either a green algae or a fungus. | ||||||
| Rhyniotaenium | Mesotaeniaceae | Likely a saccoderm desmid | ||||||
| Anechosoma | Archaeplastida incertae sedis | Unclear whether it belongs to Glaucophyta or Chlorophyta, hosts the fungus Rhyniovexator | ||||||
| Glaphyrobalantium | incertae sedis | May either be a cyanobacterium or coccoid alga? | ||||||
| Langiella | Hapalosiphonaceae | Synonymised with Kidstonia and Rhyniella | ||||||
| Archaeothrix | Oscillatoriales | Colonised lesions on Aglaophyton | ||||||
| Rhyniococcus | Chroococcaceae | Forms sheets one cell thick, | ||||||
| Eoentophysalis | Entophysalidaceae | Otherwise only known from the Proterozoic | ||||||
| Rhyniosarcina | Chroococcales | Forms sarcinoid colonial structures | ||||||
| Palaeolyngbya | Oscillatoriaceae | Other species within the genus are known from the Precambrian | ||||||
| Croftalania | Oscillatoriales incertae sedis | Common mat-forming cyanobacterium | ||||||
| Rhyniotaxillus | Cyanobacteria incertae sedis | Small coccoid cyanobacteria, resembles Entophysalis | ||||||
| Rhystigonema | Stigonemataceae | May be assignable to Stigonema itself | ||||||
| Winfrenatia | Zygomycota, Chroococcaceae | Lichen composed of a fungus, coccoid cyanobacterium | [[File:Winfrenatia reticulata reconstrucción.jpg | thumb | center | Reconstructed transverse view of Winfrenatia]] | ||
| Nematoplexus | Nematophyta | Member of the enigmatic nematophytes | ||||||
| Nematothallus | Nematophyta | Only known from one specimen, previously only known from compressions |
Interactions
The Rhynie chert, by preserving a snapshot of an ecosystem in situ in high fidelity, gives a unique opportunity to observe interactions between species and kingdoms. There is evidence of parasitic behaviour by fungi on algae Palaeonitella, provoking a hypertrophic response. wounds in various states of repair, and the mouthparts of arthropods.{{cite book | access-date = 2008-05-16
Coprolites - fossilised droppings - give a useful insight of what animals ate, even if the animals cannot be identified. Coprolites found in the Rhynie chert are typically between 0.5 and 3 mm in size, and contain a variety of contents.{{cite journal
Plants responded to fungal colonisation in different ways, depending on the fungus. The rhizoids of Nothia displayed three responses to fungal infestation: the hyphae of some (mutualistic) colonists were encased by plant cell walls; other (parasitic) fungi were met with typical host responses of increased rhizome cell size; while yet other fungi solicited an increase in thickness and pigmentation of cell walls. Once inside a plant cell, fungi produced spores, which are found in decaying plant cells; the cells may have decayed as a defence mechanism to prevent the fungi from spreading.
Fungal interactions are known to promote speciation in modern plants, and presumably also affected Devonian diversity by providing a selection pressure.
Mycorrhizae are also found in the Rhynie chert.
References
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