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Gpm (proteomics)

In proteomics, GPM stands for "Global Proteome Machine". It is a web-based, open source user interface for analyzing and displaying protein identification data. It was originally designed by Rob Craig and Ron Beavis and first released in 2003. The interface creates a series of web browser page views of tandem mass spectrometry data that has been assigned to protein sequences. The underlying data documents are stored in BIOML format files.

Since its original creation, GPM has been under continuous development. Major developments include the following:

  1. Creation of GPMDB: a large proteomics database generated using GPM;
  2. Inclusion in the Human proteome project as a data analysis and information resource;
  3. Development of a REST API for GPMDB.

References

References

  1. (2004). "Open Source System for Analyzing, Validating, and Storing Protein Identification Data". Journal of Proteome Research.
  2. (1999). "The Biopolymer Markup Language". Bioinformatics.
  3. (2004). "Open Source System for Analyzing, Validating, and Storing Protein Identification Data". Journal of Proteome Research.
  4. (2015). "Metrics for the Human Proteome Project 2015: Progress on the Human Proteome and Guidelines for High-Confidence Protein Identification". Journal of Proteome Research.
  5. (2015). "The GPMDB REST interface". Bioinformatics.
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This article was imported from Wikipedia and is available under the Creative Commons Attribution-ShareAlike 4.0 License. Content has been adapted to SurfDoc format. Original contributors can be found on the article history page.

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